Keeping correct records for independent contractors helps with tax compliance and smooth business operations.
Manage independent contractors in your payroll system to:
Track hours and pay for independent contractors
Process 1099-NEC forms
Include contractor data in payroll reports
Step 1: Set up payroll items
For nonemployee compensation:
Select
Setup
, then
Payroll Items
.
Select
Add
.
Enter item details.
In the Calculation section, choose
Nonemployee compensation
from the
Special type
dropdown.
Select
Enter
to save.
For reimbursements (if needed):
Follow the previous steps 1-3.
Select
Nonemployee reimbursement
from the
Special type
dropdown.
Select
Enter
to save.
Step 2: Add an independent contractor
Select
Setup
, then
Employees
.
Select
Add
.
Enter contractor information.
Set
Type
to
Independent Contractor
in the Identification section of the Main tab.
Go to the
Payroll Items
tab.
Mark the nonemployee compensation items.
Add any deductions or contributions.
Select
Enter
to save.
Step 3: Process Form 945 (if needed)
Independent contractor payroll check amounts are excluded from Form 941/944 and display on Form 945. Follow these steps to include amounts properly on Form 945.
Select
Setup
,
Clients
, then the
Payroll Taxes
tab.
Make sure
Do Not File
isn't marked for Form 945.
Select
Enter
to save.
Select
Setup
,
Employees
, then the
Payroll Taxes
tab.
Mark
Backup withholding
if necessary.
Select
Enter
to save.
Process Form 945 as usual.
Step 4: Create and print checks
Select
Actions
, then
Enter Transactions
or
Enter Batch Payroll Checks
.
Enter payroll checks for the independent contractor.
Print checks.
Step 5: Print 1099-NEC Forms
Select
Actions
, then
Process Payroll Tax Forms
.
Select
1099-NEC
for the
Form Type
and the correct year from the
Year
dropdown.
Select
Refresh
.
Select print options and print.
tip
If using Employee Self-Service, you can send 1099-NECs electronically by marking the checkbox during printing.
Step 6: Report new hires (California only)
Select
Actions
,
Process New Hires
, then
California Independent Contractors
.
Select the contractors to report.
Select
Preview Selected
to preview the information contained in the new hire files.